Baked Oatmeal Cups with Greek Yogurt

Freshly baked oatmeal cups with Greek yogurt topping sit on a cooling rack, ready for a healthy breakfast. Pin it
Freshly baked oatmeal cups with Greek yogurt topping sit on a cooling rack, ready for a healthy breakfast. | recipescooked.com

These individual baked oatmeal cups combine hearty rolled oats with applesauce, eggs, and warm cinnamon for a satisfying morning meal. The oatmeal base bakes until golden and set, then gets crowned with sweetened Greek yogurt and fresh berries.

Perfect for meal prep, these handheld cups stay fresh in the refrigerator for five days or freeze beautifully for two months. Customize with blueberries, diced apples, chopped nuts, or chocolate chips. Simply bake ahead, cool completely, and add the creamy yogurt topping when ready to enjoy.

My Sunday meal prep game changed forever when I discovered baked oatmeal cups during a particularly chaotic week. I was skeptical at first, but that first batch disappeared so fast from my kitchen counter that I knew this was going to be a permanent fixture in my breakfast rotation.

Last month I made a double batch for my sister who just started a new job. She texted me three days later saying she hadnt bought coffee shop breakfast once and actually looked forward to Monday mornings for the first time in years.

Ingredients

  • 2 cups old-fashioned rolled oats: Steel-cut oats wont work here and instant oats turn to mush, so stick with the old-fashioned kind for that perfect chewy texture
  • 1/2 cup unsweetened applesauce: This is the secret ingredient that keeps everything moist without needing excessive oil or butter
  • 1/2 cup milk: Any milk works beautifully so use whatever you have in your fridge
  • 2 large eggs: These bind everything together and give the cups their structure
  • 1/3 cup honey or maple syrup: Maple syrup gives a deeper flavor but honey works just as well
  • 2 tbsp melted coconut oil or unsalted butter: Coconut oil adds a subtle sweetness while butter gives a more traditional taste
  • 1 tsp vanilla extract: Dont skip this, it makes the kitchen smell amazing while they bake
  • 1 tsp ground cinnamon: Adjust up or down depending on how much you love cinnamon
  • 1/2 tsp baking powder: This helps them puff up slightly instead of staying dense
  • 1/4 tsp salt: Just enough to balance the sweetness and bring out all the flavors
  • Optional add-ins: Blueberries, diced apples, chopped nuts, mini chocolate chips, or dried fruit
  • 1 1/2 cups plain Greek yogurt: The protein-rich topping that makes these feel like a complete breakfast
  • 2 tbsp honey or maple syrup: For sweetening the yogurt topping to your taste
  • Fresh berries or fruit: For that finishing touch that makes them photo worthy

Instructions

Get your oven ready:
Preheat to 350°F and line a 12 cup muffin tin with paper liners or give it a thorough greasing
Mix the dry ingredients:
Whisk together the oats, baking powder, cinnamon, and salt in a large bowl until well combined
Combine the wet ingredients:
In a separate bowl, mix the applesauce, milk, eggs, honey or maple syrup, melted coconut oil or butter, and vanilla extract until everything is smoothly incorporated
Bring it all together:
Pour the wet mixture into the dry ingredients and stir until fully incorporated
Add your extras:
Gently fold in any berries, nuts, or chocolate chips if you are using them
Fill the cups:
Divide the oatmeal mixture evenly among the prepared muffin cups, filling each about 3/4 full
Bake to perfection:
Bake for 22 to 25 minutes until the cups are set and lightly golden on top
Let them rest:
Cool in the pan for 10 minutes before transferring to a wire rack to cool completely
Prepare the topping:
Mix the Greek yogurt with honey or maple syrup in a small bowl until sweetened to your liking
Finish and serve:
Top each cooled oatmeal cup with a spoonful of sweetened yogurt and garnish with fresh fruit
Warm, moist Baked Oatmeal Cups with Greek Yogurt garnished with fresh berries on a rustic wooden board. Pin it
Warm, moist Baked Oatmeal Cups with Greek Yogurt garnished with fresh berries on a rustic wooden board. | recipescooked.com

My toddler started calling them breakfast cookies and now requests them by name every weekend. Watching her face light up when I pull them out of the oven has become one of my favorite little moments.

Storage Secrets

Store these in an airtight container in the refrigerator for up to five days, but add the yogurt topping right before serving. They freeze exceptionally well for up to two months, just thaw overnight in the fridge.

Flavor Variations

Swap the applesauce for mashed banana when you want a different fruit base. Try pumpkin puree and pumpkin pie spice in autumn, or add cocoa powder and extra chocolate chips for a chocolate version.

Make It Your Own

The beauty of this recipe is how adaptable it is to whatever you have on hand. Once you have made the base recipe a few times, start experimenting with your favorite combinations.

  • Use peanut butter instead of coconut oil for a protein boost
  • Add a tablespoon of chia seeds or ground flax for extra nutrition
  • Top with almond butter instead of yogurt for a dairy free option
Hearty Baked Oatmeal Cups with Greek Yogurt served in a muffin tin, perfect for a quick snack. Pin it
Hearty Baked Oatmeal Cups with Greek Yogurt served in a muffin tin, perfect for a quick snack. | recipescooked.com

These oatmeal cups have saved more hectic mornings than I can count, and I hope they become your go to breakfast solution too.

Common Recipe Questions

Absolutely. Bake the oatmeal cups without the yogurt topping and store in an airtight container in the refrigerator for up to 5 days. For longer storage, freeze for 2 months and thaw overnight in the refrigerator. Add the Greek yogurt topping just before serving.

Mashed banana works perfectly as a substitute and adds natural sweetness. Pumpkin puree or sweet potato puree also create a moist, flavorful base while maintaining the proper texture.

Replace the eggs with flax eggs (1 tablespoon ground flaxseed meal mixed with 3 tablespoons water per egg), use plant-based milk, and swap the Greek yogurt for coconut yogurt or your favorite dairy-free alternative.

Steel-cut oats require longer cooking time and more liquid, so they don't work well in this application. Stick with old-fashioned rolled oats for the best texture and proper binding.

Overbaking is the most common culprit. Remove from the oven when set and lightly golden around the edges—they should still feel slightly soft in the center. The residual heat continues cooking them as they cool in the pan.

No, always store oatmeal cups without the yogurt topping. Moisture from the yogurt makes them soggy over time. Keep the topping separate and add it fresh when you're ready to eat.

Baked Oatmeal Cups with Greek Yogurt

Portable oatmeal cups topped with creamy yogurt for wholesome breakfast or snacking

Prep 15m
Cook 25m
Total 40m
Servings 12
Difficulty Easy

Ingredients

Oatmeal Base

  • 2 cups old-fashioned rolled oats
  • 1/2 cup unsweetened applesauce
  • 1/2 cup milk (dairy or plant-based)
  • 2 large eggs
  • 1/3 cup honey or maple syrup
  • 2 tbsp melted coconut oil or unsalted butter
  • 1 tsp vanilla extract
  • 1 tsp ground cinnamon
  • 1/2 tsp baking powder
  • 1/4 tsp salt

Optional Add-ins

  • 1/2 cup blueberries, diced apples, or chopped nuts
  • 1/4 cup mini chocolate chips or dried fruit

Topping

  • 1 1/2 cups plain Greek yogurt
  • 2 tbsp honey or maple syrup (for sweetening yogurt)
  • Fresh berries or fruit, for garnish

Instructions

1
Prepare the Oven and Pan: Preheat oven to 350°F. Line a standard 12-cup muffin tin with paper liners or grease thoroughly with cooking spray.
2
Combine Dry Ingredients: In a large mixing bowl, whisk together rolled oats, baking powder, ground cinnamon, and salt until evenly distributed.
3
Mix Wet Ingredients: In a separate bowl, whisk together applesauce, milk, eggs, honey or maple syrup, melted coconut oil or butter, and vanilla extract until smooth and fully combined.
4
Combine Mixtures: Pour the wet ingredients into the dry ingredients. Stir with a spatula until all ingredients are fully incorporated and no dry patches remain.
5
Add Optional Ingredients: Gently fold in your choice of optional add-ins such as berries, diced apples, chopped nuts, or chocolate chips, being careful not to overmix.
6
Fill Muffin Cups: Divide the oatmeal mixture evenly among the prepared muffin cups, filling each cup about three-quarters full.
7
Bake Oatmeal Cups: Bake for 22 to 25 minutes, or until the cups are set and lightly golden on top. Remove from oven and let cool in the pan for 10 minutes.
8
Cool Completely: Transfer the oatmeal cups to a wire cooling rack and allow them to cool completely before adding toppings.
9
Prepare Yogurt Topping: In a small bowl, mix the Greek yogurt with honey or maple syrup to taste. Stir until smooth and well combined.
10
Assemble and Serve: Top each cooled oatmeal cup with a generous spoonful of the sweetened Greek yogurt. Garnish with fresh berries or sliced fruit before serving.
Additional Information

Equipment Needed

  • Large mixing bowls
  • Whisk
  • 12-cup muffin tin
  • Paper liners or nonstick cooking spray
  • Spoon or cookie scoop
  • Wire cooling rack

Nutrition (Per Serving)

Calories 130
Protein 4g
Carbs 20g
Fat 4g

Allergy Information

  • Contains milk and eggs. May contain tree nuts if using optional nut add-ins. Oats may be processed with gluten-containing grains. Use dairy-free alternatives and certified gluten-free oats as needed.
Olivia Barnes

Sharing easy, wholesome recipes and kitchen inspiration for everyday home cooks.